Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0803209.14b with 6 members (exocyst complex component sec8)

Eukaryota / Viridiplantae / Streptophyta / Streptophytina / Embryophyta / Tracheophyta / Euphyllophyta /

... /

Spermatophyta / Magnoliopsida / Mesangiospermae / Pentapetalae / rosids / fabids / 50 kb inversion clade /

NPAAA clade /

Completeness score: 0.83

‹

This HOG has 62 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0803209	1430	631	exocyst complex component sec8
2	HOG:E0803209.20b	200	73	exocyst complex component sec8
3	HOG:E0803209.12b	18	11	exocyst complex component sec8
4	HOG:E0803209.24a	16	4	exocyst complex component sec8
5	HOG:E0803209.23a	16	4	exocyst complex component sec8
6	HOG:E0803209.20b.7b	16	4	exocyst complex component sec8
7	HOG:E0803209.7a	12	2	exocyst complex component sec8
8	HOG:E0803209.4a	12	2	exocyst complex component sec8
9	HOG:E0803209.12c	12	2	exocyst complex component sec8
10	HOG:E0803209.12b.3c	12	2	exocyst complex component sec8
11	HOG:E0803209.12b.3b	12	4	exocyst complex component sec8
12	HOG:E0803209.12a	12	2	exocyst complex component sec8
13	HOG:E0803209.11a.1b	12	2	exocyst complex component sec8
14	HOG:E0803209.11a.1a	12	2	exocyst complex component sec8
15	HOG:E0803209.11a	12	6	exocyst complex component sec8
16	HOG:E0145922	12	11	Exocyst complex component Sec8
17	HOG:E0803209.12b.3a	11	2	exocyst complex component sec8
18	HOG:E0151757	10	2	exocyst complex
19	HOG:E0803209.1b	9	2	exocyst complex component sec8
20	HOG:E0803209.21b	8	2	exocyst complex component sec8
21	HOG:E0803209.21a	8	2	exocyst complex component sec8
22	HOG:E0803209.20b.6b	8	3	exocyst complex component sec8
23	HOG:E0803209.1a	8	2	exocyst complex component sec8
24	HOG:E0803209.17b	7	15	exocyst complex component sec8
25	HOG:E0803209.9c	6	1	exocyst complex component sec8

Showing 1 to 25 of 62 rows rows per page